hPDB – Haskell library for processing atomic biomolecular structures in protein data bank format
نویسندگان
چکیده
منابع مشابه
A Library for Processing Ad hoc Data in Haskell - Embedding a Data Description Language
Ad hoc data formats, i.e. semistructured non-standard data formats, are pervasive in many domains that need software tools — bioinformatics, demographic surveys, geophysics and network software are just a few. Building tools becomes easier if parsing and other standard inputoutput processing can be automated. Modern approaches for dealing with ad hoc data formats consist of domain specific lang...
متن کاملParleda: a Library for Parallel Processing in Computational Geometry Applications
ParLeda is a software library that provides the basic primitives needed for parallel implementation of computational geometry applications. It can also be used in implementing a parallel application that uses geometric data structures. The parallel model that we use is based on a new heterogeneous parallel model named HBSP, which is based on BSP and is introduced here. ParLeda uses two main lib...
متن کاملGuarded Atomic Actions for Haskell
The guarded atomic actions model is a programming model introduced in the Bluespec high-level hardware description language. The model expresses parallel behavior with a high degree of modularity and composability. In this project, we present an implementation of guarded atomic actions as a library for the Haskell software programming language, thus introducing the guarded atomic action model o...
متن کاملValidation of Structures in the Protein Data Bank
The Worldwide PDB recently launched a deposition, biocuration, and validation tool: OneDep. At various stages of OneDep data processing, validation reports for three-dimensional structures of biological macromolecules are produced. These reports are based on recommendations of expert task forces representing crystallography, nuclear magnetic resonance, and cryoelectron microscopy communities. T...
متن کاملDebugging Haskell by Observing Intermediate Data Structures
Haskell has long needed a debugger. Although there has been much research into the topic of debugging lazy functional programs, no robust tool has yet come from the Haskell community that can help debug full Haskell until now. This paper describes a portable debugger for full Haskell, building only on commonly implemented extensions. It is based on the concept of observation of intermediate dat...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: BMC Research Notes
سال: 2013
ISSN: 1756-0500
DOI: 10.1186/1756-0500-6-483